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Parkour LIMS supports high-throughput sequencing laboratories with sample
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management, documentation, tracking, and evaluation. Parkour has a web-based
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interface that can be accessed by different user groups. Any *Active user*
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(see table below) can access the software, create new requests for
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management, documentation, tracking, and evaluation.
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Parkour has a web-based interface that can be accessed by different user
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groups (see table below).
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- Any *Active user* can access the software, create new requests for
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Next Generation Sequencing (NGS), follow the status of the request over the
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different stages of the workflow in real-time, store any request related data
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for documentation, and upload request related metadata to public sequencing
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data archives. User with *Staff* permissions and higher
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can access any part of the software to edit and process requests and
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samples through the different stages of the workflow including *Request
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overview ~ Incoming Libraries & Samples ~ Index Generator ~ Preparation
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~ Pooling ~ Load Flowcells ~ Invoicing ~ Usage ~ Statistics*. Access to
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the *Admin area* allows dynamic content adjustment as well as
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user management without any software programming knowledge.
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for documentation, and view the quality metrics of a completed run.
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- User with *Staff* permissions and higher can access any part of the software
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to edit and process requests and samples through the different stages of the
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workflow including *Request overview ~ Incoming Libraries & Samples ~ Index
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Generator ~ Preparation ~ Pooling ~ Load Flowcells ~ Invoicing ~ Usage ~
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Statistics*. Access to the *Admin area* allows dynamic content adjustment
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as well as user management without any software programming knowledge.
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Parkour's general principles are a simple yet functional web interface,
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ease of use, user input validation, and fast data processing.
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... | ... | @@ -25,19 +27,19 @@ management platform. |
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*Sections of Parkour LIMS available for users with permissions
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"Active", "PI, "Bioinformatician" and "Staff"*
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| | Active & PI | Bioinformatician | Member of Bioinformatics CF | Staff |
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|------------------------------------------------------------------|:-----------:|:----------------:|:---------------------------:|:-----:|
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| [Requests](Requests) | ✔ | ✔ | ✔ (read/write all) | ✔ |
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| [Libraries and Samples](Requests#request-status) | ✔ | ✔ | ✔ (read/write all) | ✔ |
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| [Incoming Libraries and Samples](Incoming-Libraries-and-Samples) | ❌ | ❌ | ❌ | ✔ |
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| [Index Generator](Index-Generator) | ❌ | ❌ | ❌ | ✔ |
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| Preparation | ❌ | ❌ | ❌ | ✔ |
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| Pooling | ❌ | ❌ | ❌ | ✔ |
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| Load Flowcells | ❌ | ❌ | ❌ | ✔ |
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| Invoicing | ❌ | ❌ | ❌ | ✔ |
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| Usage | ❌ | ❌ | ✔ | ✔ |
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| Statistics (Runs/Sequences) | ❌ | ❌ | ✔ | ✔ |
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| [Admin Area](Admin-area) | ❌ | ❌ | ❌ | ✔ |
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| | Active & PI | Bioinformatician | Member of BCF | Staff |
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|------------------------------------------------------------------|:-----------:|:----------------:|:------------------:|:-----:|
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| [Requests](Requests) | ✔ | ✔ | ✔ (read/write all) | ✔ |
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| [Libraries and Samples](Libraries-Samples) | ✔ | ✔ | ✔ (read/write all) | ✔ |
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| [Incoming Libraries and Samples](Incoming-Libraries-and-Samples) | ❌ | ❌ | ❌ | ✔ |
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| [Index Generator](Index-Generator) | ❌ | ❌ | ❌ | ✔ |
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| Preparation | ❌ | ❌ | ❌ | ✔ |
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| Pooling | ❌ | ❌ | ❌ | ✔ |
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| Load Flowcells | ❌ | ❌ | ❌ | ✔ |
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| Invoicing | ❌ | ❌ | ❌ | ✔ |
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| Usage | ❌ | ❌ | ✔ | ✔ |
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| Statistics (Runs/Sequences) | ✔ | ✔ | ✔ | ✔ |
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| [Admin Area](Admin-area) | ❌ | ❌ | ❌ | ✔ |
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![Screenshot of Parkour after login for users with the permission
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*staff*](assets/img/requests.png) |