Merge requests · imbforge / NGSpipe2go · GitLab

upgrade default MultiQC to 1.9

!42 · created May 17, 2021 by Sayols Puig, Sergi
- Merged
updated May 17, 2021
Reduce the number up upset plots in ChIP-Seq report

!41 · created Apr 30, 2021 by Rühle, Frank
- Merged
updated Apr 30, 2021
Merging Devel into Master with mostly RNASeq updates

!40 · created Apr 28, 2021 by Kreim, Nastasja
- Merged
updated Apr 28, 2021
fix bad insert-size plot dimensions

!39 · created Apr 19, 2021 by Rühle, Frank
- Merged
updated Apr 19, 2021
add ESSENTIAL_FRAGLEN to RNA-Seq essential vars because needed for bamCoverage module

!38 · created Mar 17, 2021 by Rühle, Frank
- Merged
updated Mar 17, 2021
Karaulan master patch 86961

!37 · created Mar 17, 2021 by Karaulanov, Emil
- Merged
updated Mar 17, 2021
RPKM changed to the more general FPKM

!36 · created Mar 17, 2021 by Karaulanov, Emil
- Merged
updated Mar 17, 2021
bugfix in cutadapt module and modify parameter

!34 · created Dec 15, 2020 by Rühle, Frank
- Merged
updated Dec 15, 2020
support PAIRED END in DEhelper.Fastqc

!33 · created Nov 30, 2020 by Sayols Puig, Sergi
- Merged
updated Nov 30, 2020
merge Devel into Master

!31 · created Nov 26, 2020 by Sayols Puig, Sergi
- Merged
updated Nov 26, 2020
merge code with toolshed repo

!30 · created Nov 09, 2020 by Sayols Puig, Sergi
- Merged
updated Nov 09, 2020
geneBodyCov can run in parallel to other steps after mapping

!29 · created Nov 06, 2020 by Sayols Puig, Sergi
- Merged
updated Nov 06, 2020
Update README.md

!28 · created Nov 02, 2020 by Karaulanov, Emil
- Merged
updated Nov 02, 2020
Update README.md

!27 · created Nov 02, 2020 by Karaulanov, Emil
- Merged
updated Nov 02, 2020
automatically select slurm queue

!26 · created Nov 02, 2020 by Sayols Puig, Sergi
- Merged
updated Nov 02, 2020
non-redundant list of GO terms + default slurm queues

!24 · created Nov 02, 2020 by Sayols Puig, Sergi
- Merged
updated Nov 02, 2020
non-redundant list of GO terms

!22 · created Nov 02, 2020 by Sayols Puig, Sergi devel
- Merged
updated Nov 02, 2020
Fix new location of trackhub.done file in ChIP-seq & RNA-seq reports

!21 · created Oct 29, 2020 by Martin Oti
- Merged
updated Oct 29, 2020
updated RNAseq report: FastQC + STAR graphics, flexible sample sorting, sample naming throughout report, strandedness calculation, added FastQScreen paragraph, removed edgeR and Bustard helper functions

!20 · created Sep 21, 2020 by Sayols Puig, Sergi
- Merged
updated Sep 21, 2020
add sample labels on the PCA plot

!19 · created Sep 16, 2020 by Karaulanov, Emil
- Merged
updated Sep 16, 2020

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