Mflow does not find 'Snakefile' in pwd
command: mflow --configfile ArabidopsisGG.yaml -- -n
pwd: /home/chotting/workflows/mflow/workflows/life-science/ProtTrans
ls:
ArabidopsisGG.yaml env IMB_Transcriptomics_Workflow.ann m2cluster.json m2remoteStart.sh slurm-8562176.out smkGG.out Snakefile startSnakemake.sh workflows
Error:
Writing configuration to temporary file. ... OK Assigning Workflow (Snakefile) ... Traceback (most recent call last): File "/cluster/easybuild/broadwell/software/mflow/0.1-foss-2019b-Python-3.7.4/bin/mflow", line 290, in <module> snakefile = get_workflow(workflow_path, workflow) File "/cluster/easybuild/broadwell/software/mflow/0.1-foss-2019b-Python-3.7.4/lib/python3.7/site-packages/mflow/lib/workflows.py", line 79, in get_workflow workflows = os.listdir(os.path.join(workflow_path, topic)) NotADirectoryError: [Errno 20] Not a directory: '/gpfs/fs1/home/chotting/workflows/mflow/workflows/life-science/ProtTrans/m2cluster.json'