Commits · master · HPC - JGU - Life Sciences / workflows · GitLab

06 May, 2020 1 commit
- trying syntax highlighter for smk files · 5a666386
  Christian Meesters authored May 06, 2020
  
  5a666386
25 Mar, 2020 8 commits
- Merge branch 'devel' into 'master' · 821ebc2b
  Christian Meesters authored Mar 25, 2020
```
wrapper version v0

See merge request !1
```
  821ebc2b
- mflow.py: working version for demo workflow ... · 507350b5
  Christian Meesters authored Mar 25, 2020
  
  507350b5
- book_analysis.sm - demo workflow without verbose tarball creation · a4928131
  Christian Meesters authored Mar 25, 2020
  
  a4928131
- mflow: minor output fixes · dec89119
  Christian Meesters authored Mar 25, 2020
  
  dec89119
- lib/reporter.py: added welcome message · 8036bf8d
  Christian Meesters authored Mar 25, 2020
  
  8036bf8d
- lib/reporter.py: nicer output for goodbye message · 6c1d5ade
  Christian Meesters authored Mar 25, 2020
  
  6c1d5ade
- lib/workflows.py: fix - --show_workflow is now working · 3898d198
  Christian Meesters authored Mar 25, 2020
  
  3898d198
- profiles: finalized demo configs for both clusters · 86d7dfb9
  Christian Meesters authored Mar 25, 2020
  
  86d7dfb9
24 Mar, 2020 13 commits
- mogonII.conf: added demo prefixes to rules and jobnames, to avoid any future name conflicts · 192e1d19
  Christian Meesters authored Mar 24, 2020
  
  192e1d19
- book_analysis.sm: added demo prefixes · 07d6132b
  Christian Meesters authored Mar 24, 2020
  
  07d6132b
- slurm-submit.py: added outcommented debugging lines · fce438ab
  Christian Meesters authored Mar 24, 2020
  
  fce438ab
- mogonII.conf: added two rules for the book_analysis demo workflow · af1fb53e
  Christian Meesters authored Mar 24, 2020
  
  af1fb53e
- - new feature --show_workflow · 36a96163
  Christian Meesters authored Mar 24, 2020
```
- new feature --directory
```
  36a96163
- lib/workflows.py: new function - 'show_workflow()' · c96dfada
  Christian Meesters authored Mar 24, 2020
  
  c96dfada
- book_analysis.sm: some adaptions, for internal directory layout · 982a38a2
  Christian Meesters authored Mar 24, 2020
  
  982a38a2
- gnarf: new modes · 547c0308
  Christian Meesters authored Mar 24, 2020
  
  547c0308
- wordcount.py: new mode! · 6c316030
  Christian Meesters authored Mar 24, 2020
  
  6c316030
- zipf_test.py: adapted for workflow compatibility - getting individual files · 17abf458
  Christian Meesters authored Mar 24, 2020
  
  17abf458
- matplotlibrc: new mode · 9c19f7f9
  Christian Meesters authored Mar 24, 2020
  
  9c19f7f9
- README in mflow: Added a pro-forma README file for setup.py · 3e3eb049
  Christian Meesters authored Mar 24, 2020
  
  3e3eb049
- setup.py: added (pro forma) author and mail · da776e75
  Christian Meesters authored Mar 24, 2020
  
  da776e75
23 Mar, 2020 1 commit
- multimode message: · 936b5537
  Christian Meesters authored Mar 23, 2020
```
- fixes due to setup changes
- working exec
```
  936b5537
10 Mar, 2020 3 commits
- mflow: better messages, when no workflow is supplied · 8830342b
  Christian Meesters authored Mar 10, 2020
  
  8830342b
- reporter: changed default verbosity requirement · aa731ac3
  Christian Meesters authored Mar 10, 2020
  
  aa731ac3
- account: now correct checking of only one account · a5781336
  Christian Meesters authored Mar 10, 2020
  
  a5781336
09 Mar, 2020 3 commits
- account: bug fix · 18a56303
  Christian Meesters authored Mar 09, 2020
  
  18a56303
- book_analysis.sm: script -> shell · f83423e7
  Christian Meesters authored Mar 09, 2020
  
  f83423e7
- mflow.py: notification about correct account deducement + tinkering · 030d1ce0
  Christian Meesters authored Mar 09, 2020
  
  030d1ce0
05 Mar, 2020 11 commits
- __init__.py added to scripts folder · ef2b98ea
  Christian Meesters authored Mar 05, 2020
  
  ef2b98ea
- zipf_test.py: corrected updated interface · bffaf2c0
  Christian Meesters authored Mar 05, 2020
  
  bffaf2c0
- wordcount: conventional interface · ca1e819d
  Christian Meesters authored Mar 05, 2020
  
  ca1e819d
- added a gitignore file · 556a2290
  Christian Meesters authored Mar 05, 2020
  
  556a2290
- plotcount.py - fixed · ae6a1a3f
  Christian Meesters authored Mar 05, 2020
  
  ae6a1a3f
- plotcount.py - forseen with the necessary interface · b02acbfc
  Christian Meesters authored Mar 05, 2020
  
  b02acbfc
- book_analysis.sm: sample as it should be · c1019f3e
  Christian Meesters authored Mar 05, 2020
  
  c1019f3e
- scripts/zipf_test.py: changed for script output instead of shell re-direction --- still very crude · 8ae57f20
  Christian Meesters authored Mar 05, 2020
  
  8ae57f20
- mflow/mflow.py: enabled correct workflow lookup · 45052467
  Christian Meesters authored Mar 05, 2020
  
  45052467
- mflow/lib/workflows.py: added comment · 7d2047ba
  Christian Meesters authored Mar 05, 2020
  
  7d2047ba
- workflows/demo/book_analysis.sm: starting to fix for wrapper · eb444c1b
  Christian Meesters authored Mar 05, 2020
  
  eb444c1b