Commit 40443c28 authored by Christian Meesters's avatar Christian Meesters

by using the biopython module version conflicts show be avoided

parent fb3a1032
......@@ -43,8 +43,7 @@ module purge
# load the most current version of GNU parallel
module load tools/parallel/20190822
#module load lang/Python/3.6.4-foss-2018a
module load lang/Python/3.7.4-GCCcore-8.3.0
module load bio/Biopython/1.74-foss-2019a
#TODO: find a solution for the bug in BLAST+ AND to select the version by hand
module load bio/BLAST+/2.9.0-gompi-2019a
#module load bio/BLAST+/2.7.1-foss-2018a
......@@ -714,7 +713,6 @@ if [ ! -d "$WORKDIR/$SPLITFILEDIR" ]; then
mkdir -p "$WORKDIR/$SPLITFILEDIR" || exit 1;
mkdir -p "$WORKDIR/output" || exit 1;
cd "$WORKDIR"
pip install biopython
echo "executing scratch generator on $FASTA ($_arg_splitup_per_queryfile entries per file)"
eval "${SCRIPT_PATH}/splitter.py $FASTA $_arg_splitup_per_queryfile " & # splitup queryfile
queue $!
......
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