seq-analysis issueshttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues2020-04-17T22:58:49+02:00https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/11support for lambda2020-04-17T22:58:49+02:00Meesters, Christiansupport for lambdatest lambdatest lambdaupdate blast wrapperMeesters, ChristianMeesters, Christian2019-02-05https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/10bug: blast mapper amends .xml suffix regardless of -outfmt option2019-08-21T11:59:58+02:00Meesters, Christianbug: blast mapper amends .xml suffix regardless of -outfmt optiontitle says it alltitle says it allupdate blast wrapperMeesters, ChristianMeesters, Christian2019-02-11https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/9feature - add samtools to SDI module2019-01-21T09:06:29+01:00Meesters, Christianfeature - add samtools to SDI modules. titles. titlecreate indexing / sorting moduleMeesters, ChristianMeesters, Christian2019-01-18https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/8modularize trimmomatic module2019-01-24T13:16:21+01:00Meesters, Christianmodularize trimmomatic moduleto be renamed multiQC or similar ...to be renamed multiQC or similar ...release 0.3.1 of trimmomaticMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/7new module - subread2020-04-17T22:56:04+02:00Meesters, Christiannew module - subreadsee titlesee titleMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/6feature - integrate Multiqc in QA module2020-04-17T22:56:28+02:00Meesters, Christianfeature - integrate Multiqc in QA modulesee titlesee titleMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/5feature - integrate STAR in mapper module2019-03-19T08:51:52+01:00Meesters, Christianfeature - integrate STAR in mapper moduleSTAR incl. single end processingSTAR incl. single end processingupdate mapper wrapperMeesters, ChristianMeesters, Christian2019-02-11https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/4tools - checksum tests for uploads2020-04-17T22:59:11+02:00Meesters, Christiantools - checksum tests for uploadsnot part of the seq analysis, yet a useful idea: tablutated file - checksum input to be controlled in a parallel jobnot part of the seq analysis, yet a useful idea: tablutated file - checksum input to be controlled in a parallel jobMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/3test module compatibility2018-12-13T12:30:04+01:00Meesters, Christiantest module compatibility* test compatibility with M1 and M2
* test for bwa and bowtie2* test compatibility with M1 and M2
* test for bwa and bowtie2release 0.5.1 of parallel mapping toolsMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/2test picard anew2019-02-13T14:17:05+01:00Meesters, Christiantest picard anewfutex hits in daughter processes?futex hits in daughter processes?create indexing / sorting moduleMeesters, ChristianMeesters, Christian2018-12-14https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/1test sambamba2019-01-13T18:28:26+01:00Meesters, Christiantest sambamba* sam file compression
* sam file compressed and sorted?
* which stage indexing* sam file compression
* sam file compressed and sorted?
* which stage indexingcreate indexing / sorting moduleMeesters, ChristianMeesters, Christian2018-12-13