seq-analysis issueshttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues2019-02-28T13:16:45+01:00https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/26forbit reading / writing from/to home dir2019-02-28T13:16:45+01:00Meesters, Christianforbit reading / writing from/to home dirsee titlesee titlecheck all for issues 20-22, abstract error handling and outdir creation from all modulesMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/19bug: grep for 'set -x' in wrappers2019-02-26T11:19:16+01:00Meesters, Christianbug: grep for 'set -x' in wrappersuncomment those in production releasesuncomment those in production releasescheck all for issues 20-22, abstract error handling and outdir creation from all modulesMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/24create error handline lib2019-02-26T11:12:18+01:00Meesters, Christiancreate error handline libsee titlesee titlecheck all for issues 20-22, abstract error handling and outdir creation from all modulesMeesters, ChristianMeesters, Christian2019-02-26https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/25_arg_removedups not handled in SDITools2019-02-25T11:44:13+01:00Meesters, Christian_arg_removedups not handled in SDIToolssee titlesee titleMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/2test picard anew2019-02-13T14:17:05+01:00Meesters, Christiantest picard anewfutex hits in daughter processes?futex hits in daughter processes?create indexing / sorting moduleMeesters, ChristianMeesters, Christian2018-12-14https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/16test flexbar2019-01-28T14:38:11+01:00Meesters, Christiantest flexbaradd to QC moduleadd to QC modulerelease 0.3.1 of trimmomaticMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/8modularize trimmomatic module2019-01-24T13:16:21+01:00Meesters, Christianmodularize trimmomatic moduleto be renamed multiQC or similar ...to be renamed multiQC or similar ...release 0.3.1 of trimmomaticMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/15trimmer removes compression suffix and leaves trailing dot2019-01-24T13:15:25+01:00Meesters, Christiantrimmer removes compression suffix and leaves trailing dots. titles. titlerelease 0.3.1 of trimmomaticMeesters, ChristianMeesters, Christianhttps://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/9feature - add samtools to SDI module2019-01-21T09:06:29+01:00Meesters, Christianfeature - add samtools to SDI modules. titles. titlecreate indexing / sorting moduleMeesters, ChristianMeesters, Christian2019-01-18https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/1test sambamba2019-01-13T18:28:26+01:00Meesters, Christiantest sambamba* sam file compression
* sam file compressed and sorted?
* which stage indexing* sam file compression
* sam file compressed and sorted?
* which stage indexingcreate indexing / sorting moduleMeesters, ChristianMeesters, Christian2018-12-13https://gitlab.rlp.net/hpc-jgu-lifescience/seq-analysis/-/issues/3test module compatibility2018-12-13T12:30:04+01:00Meesters, Christiantest module compatibility* test compatibility with M1 and M2
* test for bwa and bowtie2* test compatibility with M1 and M2
* test for bwa and bowtie2release 0.5.1 of parallel mapping toolsMeesters, ChristianMeesters, Christian