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HPC - JGU - Life Sciences
seq-analysis
Commits
f4b1b954
Commit
f4b1b954
authored
Aug 12, 2020
by
Christian Meesters
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fix: now reserving memory for node
parent
ba065fe4
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sort_dedup_index/parallel_SDITools/SDIWrapper
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sort_dedup_index/parallel_SDITools/SDIWrapper
View file @
f4b1b954
...
...
@@ -435,7 +435,7 @@ if [ -z "$SLURM_JOB_ID" ]; then
fi
# safe guards
if
[
$nnodes
-eq
0
]
;
then
nnodes
=
1
nnodes
=
1
fi
### ATTENTION - this is special about this module:
...
...
@@ -460,6 +460,7 @@ if [ -z "$SLURM_JOB_ID" ]; then
fi
for
sample
in
${
samples
[@]
}
;
do
submit_statement
=
"sbatch -N 1 -n 1 -c
$sthreads
-t 300 -A
$_arg_assoc
-p
$spartition
-o
${
sort_out
}
/
${
JOBTAG
}
_%j.out --requeue"
submit_statement
=
"
$submit_statement
--mem=
$smem
"
if
[
"
$cluster
"
!=
"mogon1"
]
;
then
submit_statement
=
"
${
submit_statement
}
-C anyarch "
fi
...
...
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