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HPC - JGU - Life Sciences
seq-analysis
Commits
d415d0cd
Commit
d415d0cd
authored
Jan 15, 2018
by
Christian Meesters
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fix: accounting for local database path
parent
455f0056
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examples/blast/parallel_BLAST/parallel_BLAST
examples/blast/parallel_BLAST/parallel_BLAST
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examples/blast/parallel_BLAST/parallel_BLAST
View file @
d415d0cd
#!/bin/bash
#
set -x
#
set -e
#
PS4='Line ${LINENO}: '
set
-x
set
-e
PS4
=
'Line ${LINENO}: '
module unuse /cluster/easybuild/modules/all
module use /cluster/easybuild/nehalem/modules/all
...
...
@@ -389,7 +389,7 @@ fi
### prepare filepath and -names for creating working folder
FASTAPATH
=
$(
dirname
$FASTA
)
DATABASEPATH
=
$(
dirname
$DATABASE
)
DATABASEPATH
=
$(
realpath
$DATABASE
)
FASTAID
=
$(
basename
$FASTA
)
DATABASEID
=
$(
basename
$DATABASE
)
...
...
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