Commit c2b944d4 authored by Christian Meesters's avatar Christian Meesters

less verbose, removed debugging output

parent 142c65a1
......@@ -19,13 +19,11 @@ cat <<EOF > $cmdfile
tmp_out=${JOBDIR}/\$outfname
trap "rm -f \$tmp_out" EXIT
START_BLAST=\$(date +%s)
set -x
$_arg_executable -num_threads $SLURM_CPUS_PER_TASK -db $DATABASE $BLASTPARAMS -query \$1 -out \$tmp_out
set +x
success=\$?
END_BLAST=\$(date +%s)
elapsed=\$(bc <<< "scale=1; \$((\$END_BLAST - \$START_BLAST))/60")
echo "Elapsed: \$elapsed"
#echo "Elapsed for '\$1': \$elapsed"
# only proceed, when ready
if [ \$success -eq 0 ]; then
......
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