Commit af3b0e6c authored by Christian Meesters's avatar Christian Meesters

hot fix: avoiding compatibility issues

parent 1154a99b
......@@ -31,6 +31,7 @@ cat <<EOF > $cmdfile
shrink_job
exit
fi
module purge
module load bio/STAR # most current
# STAR just needs an outfile prefix - juchuuu
......
......@@ -25,6 +25,7 @@ cat <<EOF > $cmdfile
shrink_job
exit
fi
module purge
module load bio/Bowtie2/2.3.4.3-foss-2018a
module load bio/SAMtools/1.9
#reference=${reference%%.*} # only provide the prefix + path!
......
......@@ -17,6 +17,7 @@ cmdfilewriter()
{
cat <<EOF > $cmdfile
#!/bin/bash
module purge
module load bio/BWA/0.7.17
module load bio/SAMtools
# source the error reporter script
......
......@@ -24,6 +24,7 @@ cmdfilewriter()
{
cat <<EOF > $cmdfile
#!/bin/bash
module purge
module load bio/SeqAn
# source the error reporter script
source ${SCRIPT_PATH}/errors.sh
......
Markdown is supported
0%
or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment