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HPC - JGU - Life Sciences
seq-analysis
Commits
9de9d0be
Commit
9de9d0be
authored
Aug 21, 2019
by
Christian Meesters
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changed UI default message for split arg
parent
14739780
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blast/parallel_BLAST/LA_Wrapper
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blast/parallel_BLAST/LA_Wrapper
View file @
9de9d0be
...
...
@@ -140,7 +140,7 @@ print_help ()
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"-r,--ramdisk"
"ramdisk size in units of GiB (default is 40 GiB)"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"-t,--threads"
"blast threads (default is 1)"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"--blastparams"
"blast parameters (default is -outfmt 6 (for blank tabulated output))"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"-s,--splitup"
"No. of FASTA sequences per query file (default is
20
)"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"-s,--splitup"
"No. of FASTA sequences per query file (default is
to generate ~5000 files
)"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"--blastdir"
"output directory (default is composition of input names)"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"--executable"
"choose executable (currently only from NCBI-BLAST, default: blastx)"
printf
"
\\
t
\\
033[1m%s
\\
033[0m
\\
t%s
\\
n"
"--compress"
"if set, the output files will be merged and compressed (time consuming!, defaultt: off)"
...
...
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