Commit 14739780 authored by Christian Meesters's avatar Christian Meesters

reduced the number of split files for the default

parent 60bb252f
......@@ -175,10 +175,14 @@ credits()
{
echo "The original implementation (2013/2014) was written by Christoph Martin (ZDV, UNIX group)"
echo "Benjamin Rieger (Institut für Molekulargenetik) contributed a perl implementation"
echo "of a format conform splitting of FASTA files."
echo "of a format conform splitting of FASTA files, which is not used, anymore."
echo "The original implemenation was a LSF chain job. It was eventually adopted and maintained by"
echo "Christian Meesters (ZDV, HPC group) from 2017 onwards."
echo
echo "I am particularly grateful for their feedback to:"
echo "- Lukas Hellman (AG Hankeln)"
echo "- Benjamin Rieger (NGS Facility)"
echo
echo "History of the re-implementation:"
echo "- v0.1 -- 27. Sep. 2017 -- release of the re-implementation for SLURM supporting the"
echo " ability to compute accross nodes."
......@@ -201,7 +205,7 @@ credits()
echo "- v0.3.2 -- 16. Jan. 2019 -- hot fix for new ramdisk and slurmstepd support"
echo "- v0.4 -- 06. Mar. 2019 -- refactored version:"
echo " - executables now pluggable"
echo "- v0.5 -- 17. Aug. 2019 -- fix: parser did not work for '--mem'-arg properly"
echo "- v0.5 -- 21. Aug. 2019 -- fix: parser did not work for '--mem'-arg properly"
echo " update: - clearer UI"
echo " - better default memory settings"
echo " - faster stage-in for reference data"
......@@ -494,10 +498,10 @@ if [ $_arg_splitup_per_queryfile -ne 0 ]; then # the user thinks differently?
error "There would be more than '$nsplits' files in scratch."
exit 1
elif [ $nsplits -gt 15000 ]; then
warning "There will be '$nsplits' files in scratch."
warning "There will be '$nsplits' files in scratch -- resulting in poor performance."
fi
else # infer the value
_arg_splitup_per_queryfile=$((nentries / 10000))
_arg_splitup_per_queryfile=$((nentries / 5000))
fi
# default values, see:
......
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